% !TEX TS-program = pdflatex
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% filename = "YourName-Dissertation.tex",
% version = "1.6.5",
% date = "2019/07/10",
% authors = "Gary L. Gray,
% copyright = "Gary L. Gray",
% address = "Engineering Science and Mechanics,
% 212 Earth & Engineering Sciences Bldg.,
% Penn State University,
% University Park, PA 16802,
% USA",
% telephone = "814-863-1778",
% email = "gray@psu.edu",
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Change History:
% The change history can be found in the accompanying document
% entitled "YourName-Dissertation Template Change History.md".
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% This is a template file to help get you started using the
% psuthesis.cls for theses and dissertations at Penn State
% University. You will, of course, need to put the
% psuthesis.cls file someplace that LaTeX will find it.
%
% I have set up a directory structure that I find to be clean
% and convenient. You can readjust it to suit your tastes. In
% fact, the structure used by our students is even a little
% more involved and commands are defined to point to the
% various directories.
%
% This document has been set up to be typeset using pdflatex.
% About the only thing you will need to change if typesetting
% using latex is the \DeclareGraphicsExtensions command.
%
% The psuthesis document class uses the same options as the
% book class. In addition, it requires that you have the
% ifthen, calc, setspace, and tocloft packages.
%
% The first additional option specifies the degree type. You
% can choose from:
% Ph.D. using class option <phd>
% M.S. using class option <ms>
% M.Eng. using class option <meng>
% M.A. using class option <ma>
% B.S. using class option <bs>
% B.A. using class option <ba>
% Honors from the Schreyer Honors College <schreyer>
%
% The second additional option inlinechaptertoc determines
% the formatting of the Chapter entries in the Table of
% Contents. The default sets them as two-line entries (try it).
% If you want them as one-line entries, issue the
% inlinechaptertoc option.
%
% The class option schreyer should be used for theses
% submitted to the Schreyer Honors College.
%
% The class option esc should be used by all Engineering Science
% students.
%
% The option option twoha should be used if you are earning
% interdisciplanary honors and thus have two honors advisors.
%
% The class option ``secondthesissupervisor'' should be used
% for baccalaureate honors degrees if you have a second
% Thesis Supervisor.
%
% The vita is only included with the phd option and it is
% placed at the end of the thesis. The permissions page is only
% included with the ms, meng, and ma options.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Only one of the following lines should be used at a time.
% Doctoral students.
%\documentclass[phd,12pt]{psuthesis}
% Masters students
%\documentclass[ms,12pt]{psuthesis}
% Bachelors students in the Schreyer Honors College.
\documentclass[bs,schreyer,12pt]{psuthesis}
% Bachelors students in the Schreyer Honors College & Engineering Science.
%\documentclass[bs,schreyer,esc,twoha,12pt]{psuthesis}
% Bachelors students in Engineering Science.
%\documentclass[bs,esc,12pt]{psuthesis}
\usepackage[T1]{fontenc}
\usepackage{lmodern}
\usepackage{textcomp}
\usepackage{microtype}
%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Packages I like to use. %
%%%%%%%%%%%%%%%%%%%%%%%%%%%
\usepackage{amsmath}
\usepackage{amssymb}
%\usepackage{amsthm}
%\usepackage{exscale}
%\usepackage[mathscr]{eucal}
%\usepackage{bm}
\usepackage{subfigure}
\usepackage{eqlist} % Makes for a nice list of symbols.
\usepackage[nosepfour,warning,np,debug,autolanguage]{numprint}
\usepackage{acro}
\usepackage{booktabs}
\usepackage[final]{graphicx}
\usepackage[dvipsnames]{color}
\DeclareGraphicsExtensions{.pdf, .jpg}
\usepackage{url}
% http://www.tex.ac.uk/cgi-bin/texfaq2html?label=citesort
\usepackage{cite}
\usepackage{titlesec}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Use of the hyperref package %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% This is optional and is included only for those students
% who want to use it.
%
% To the hyperref package, uncomment the following line:
%\usepackage{hyperref}
%
% Note that you should also uncomment the following line:
%\renewcommand{\theHchapter}{\thepart.\thechapter}
%
% to work around some a problem hyperref has with the fact
% the psuthesis class has unnumbered pages after which page
% counters are reset.
% Set the baselinestretch using the setspace package.
% The LaTeX Companion claims that a \baselinestretch of
% 1.24 gives one-and-a-half line spacing, which is allowed
% by the PSU thesis office. As of October 18, 2013, the Graduate
% School states ``The text of an eTD may be single-, double- or
% one- and-a-half-spaced.'' Go nuts!
\setstretch{1.24}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% SPECIAL SYMBOLS AND NEW COMMANDS %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\input{SupplementaryMaterial/UserDefinedCommands}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Renewed Float Parameters %
% (Makes floats fit better on the page) %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\renewcommand{\floatpagefraction}{0.85}
\renewcommand{\topfraction} {0.85}
\renewcommand{\bottomfraction} {0.85}
\renewcommand{\textfraction} {0.15}
% ----------------------------------------------------------- %
%%%%%%%%%%%%%%%%
% FRONT-MATTER %
%%%%%%%%%%%%%%%%
% Title
\title{Dynamics of Fish}
% Author and Department
\author{Your Name}
\dept{Your Department Name}
% the degree will be conferred on this date
\degreedate{May 2013}
% year of your copyright
\copyrightyear{2013}
% This command is used for students submitting a thesis to the
% Schreyer Honors College and for students in Engineering Science.
% The argument of this command should contain every after the word
% ``requirements'' that appears on the title page. This provides the
% needed flexibility for all the degree types.
\bachelorsdegreeinfo{for a baccalaureate degree \\ in Engineering Science \\ with honors in Engineering Science}
% This is the document type. For example, this could also be:
% Comprehensive Document
% Thesis Proposal
\documenttype{Thesis}
%\documenttype{Dissertation}
%\documenttype{Comprehensive Document}
% This will generally be The Graduate School, though you can
% put anything in here to suit your needs.
\submittedto{The Graduate School}
% This is the college to which you are submitting the
% thesis/dissertation.
\collegesubmittedto{College of Engineering}
%%%%%%%%%%%%%%%%%%
% Signatory Page %
%%%%%%%%%%%%%%%%%%
% You can have up to 7 committee members, i.e., one advisor
% and up to 6 readers.
%
% Begin by specifying the number of readers.
\numberofreaders{4}
% For baccalaureate honors degrees, enter the name of your
% honors advisor below.
\honorsadvisor{Honors P. Advisor}
{Associate Professor of Engineering Science and Mechanics}
\honorsadvisortwo{Honors P. Advisor, Jr.}
{Professor of Engineering Science and Mechanics}
% For baccalaureate honors degrees, if you have a second
% Thesis Supervisor, enter his or her name below.
\secondthesissupervisor{Second T. Supervisor}
% For baccalaureate honors degrees, certain departments
% (e.g., Engineering Science and Mechanics) require the
% signature of the department head. In that case, enter the
% name and title of your department head below.
\escdepthead{Department Q. Head}
\escdeptheadtitle{P. B. Breneman Chair and Professor
of Engineering Science and Mechanics
}
% Input reader information below. The optional argument, which
% comes first, goes on the second line before the name.
\advisor[Thesis Advisor][Chair of Committee]
{Joseph H. Blow}
{Professor of SomeThing}
\readerone[Optional Title Here]
{Reader Name}
{Professor of SomeThing}
\readertwo[Optional Title Here]
{Reader Name}
{Professor of SomeThing}
\readerthree[Optional Title Here]
{Reader Name}
{Professor of SomeThing}
\readerfour[Optional Title Here]
{Reader Name}
{Professor of SomeThing}
\readerfive[Optional Title Here]
{Reader Name}
{Professor of SomeThing}
% Format the Chapter headings using the titlesec package.
% You can format section headings and the like here too.
\definecolor{gray75}{gray}{0.75}
\newcommand{\hsp}{\hspace{15pt}}
\titleformat{\chapter}[display]{\fontsize{30}{30}\selectfont\bfseries\sffamily}{Chapter \thechapter\hsp\textcolor{gray75}{\raisebox{3pt}{|}}}{0pt}{}{}
\titleformat{\section}[block]{\Large\bfseries\sffamily}{\thesection}{12pt}{}{}
\titleformat{\subsection}[block]{\large\bfseries\sffamily}{\thesubsection}{12pt}{}{}
% Makes use of LaTeX's include facility. Add as many chapters
% and appendices as you like.
\includeonly{%
Chapter-1/Chapter-1,%
Chapter-2/Chapter-2,%
Chapter-3/Chapter-3,%
Chapter-4/Chapter-4,%
Chapter-5/Chapter-5,%
Appendix-A/Appendix-A,%
Appendix-B/Appendix-B,%
Appendix-C/Appendix-C,%
Appendix-D/Appendix-D,%
Appendix-E/Appendix-E%
}
\usepackage{listings}
%%%%%%%%%%%%%%%%%
% THE BEGINNING %
%%%%%%%%%%%%%%%%%
\begin{document}
\pagestyle{fancy}
\fancyhead[L,C,R]{}
\fancyfoot[L,R]{}
\fancyfoot[C]{\thepage}
\renewcommand{\headrulewidth}{0pt}
\renewcommand{\footrulewidth}{0pt}
%%%%%%%%%%%%%%%%%%%%%%%%
% Preliminary Material %
%%%%%%%%%%%%%%%%%%%%%%%%
% This command is needed to properly set up the frontmatter.
\frontmatter
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% IMPORTANT
%
% The following commands allow you to include all the
% frontmatter in your thesis. If you don't need one or more of
% these items, you can comment it out. Most of these items are
% actually required by the Grad School -- see the Thesis Guide
% for details regarding what is and what is not required for
% your particular degree.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% !!! DO NOT CHANGE THE SEQUENCE OF THESE ITEMS !!!
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Generates the title page based on info you have provided
% above.
\psutitlepage
% Generates the committee page -- this is bound with your
% thesis. If this is an baccalaureate honors thesis, then
% comment out this line.
\psucommitteepage
% Generates the abstract. The argument should point to the
% file containing your abstract.
\thesisabstract{SupplementaryMaterial/Abstract}
% Generates the Table of Contents
\thesistableofcontents
% Generates the List of Figures
\begin{singlespace}
\renewcommand{\listfigurename}{\sffamily\Huge List of Figures}
\setlength{\cftparskip}{\baselineskip}
\addcontentsline{toc}{chapter}{List of Figures}
%\fancypagestyle{plain}{%
%\fancyhf{} % clear all header and footer fields
%\fancyfoot[C]{\thepage}} % except the center
\listoffigures
\end{singlespace}
\clearpage
% Generates the List of Tables
\begin{singlespace}
\renewcommand{\listtablename}{\sffamily\Huge List of Tables}
\setlength{\cftparskip}{\baselineskip}
\addcontentsline{toc}{chapter}{List of Tables}
\listoftables
\end{singlespace}
\clearpage
% Generates the List of Symbols. The argument should point to
% the file containing your List of Symbols.
\thesislistofsymbols{SupplementaryMaterial/ListOfSymbols}
% Generates the Acknowledgments. The argument should point to
% the file containing your Acknowledgments.
\thesisacknowledgments{SupplementaryMaterial/Acknowledgments}
% Generates the Epigraph/Dedication. The first argument should
% point to the file containing your Epigraph/Dedication and
% the second argument should be the title of this page.
%\thesisdedication{SupplementaryMaterial/Dedication}{Dedication}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% This command is needed to get the main part of the %
% document going. %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\thesismainmatter
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% This is an AMS-LaTeX command to allow breaking %
% of displayed equations across pages. Note the %
% closing the "}" just before the bibliography. %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\allowdisplaybreaks{
%\pagestyle{fancy}
%\fancyhead{}
%
%%%%%%%%%%%%%%%%%%%%%%
% THE ACTUAL CONTENT %
%%%%%%%%%%%%%%%%%%%%%%
% Chapters
\include{Chapter-1/Chapter-1}
%\include{Chapter-2/Chapter-2}
%\include{Chapter-3/Chapter-3}
%\include{Chapter-4/Chapter-4}
%\include{Chapter-5/Chapter-5}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Appendices
%
% Because of a quirk in LaTeX (see p. 48 of The LaTeX
% Companion, 2e), you cannot use \include along with
% \addtocontents if you want things to appear the proper
% sequence.
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\appendix
\titleformat{\chapter}[display]{\fontsize{30}{30}\selectfont\bfseries\sffamily}{Appendix \thechapter\textcolor{gray75}{\raisebox{3pt}{|}}}{0pt}{}{}
% If you have a single appendix, then to prevent LaTeX from
% calling it ``Appendix A'', you should uncomment the following two
% lines that redefine the \thechapter and \thesection:
%\renewcommand\thechapter{}
%\renewcommand\thesection{\arabic{section}}
\include{Appendix-A/Appendix-A}
\include{Appendix-B/Appendix-B}
\include{Appendix-C/Appendix-C}
\include{Appendix-D/Appendix-D}
\include{Appendix-E/Appendix-E}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% ESM students need to include a Nontechnical Abstract as the %
% last appendix. %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% This \include command should point to the file containing
% that abstract.
%\include{nontechnical-abstract}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
} % End of the \allowdisplaybreak command %
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%
% BIBLIOGRAPHY %
%%%%%%%%%%%%%%%%
% You can use BibTeX or other bibliography facility for your
% bibliography. LaTeX's standard stuff is shown below. If you
% bibtex, then this section should look something like:
\begin{singlespace}
\bibliographystyle{GLG-bibstyle}
\addcontentsline{toc}{chapter}{Bibliography}
\bibliography{Biblio-Database}
\end{singlespace}
%\begin{singlespace}
%\begin{thebibliography}{99}
%\addcontentsline{toc}{chapter}{Bibliography}
%\frenchspacing
%\bibitem{Wisdom87} J. Wisdom, ``Rotational Dynamics of Irregularly Shaped Natural Satellites,'' \emph{The Astronomical Journal}, Vol.~94, No.~5, 1987 pp. 1350--1360.
%\bibitem{G&H83} J. Guckenheimer and P. Holmes, \emph{Nonlinear Oscillations, Dynamical Systems, and Bifurcations of Vector Fields}, Springer-Verlag, New York, 1983.
%\end{thebibliography}
%\end{singlespace}
\backmatter
% Vita
\vita{SupplementaryMaterial/Vita}
\end{document}